pyNNsMD
latest
General:
Introduction
Installation
Usage
Reference:
pyNNsMD
pyNNsMD package
Subpackages
pyNNsMD.data package
pyNNsMD.datasets package
pyNNsMD.hypers package
pyNNsMD.layers package
pyNNsMD.models package
pyNNsMD.plots package
pyNNsMD.scaler package
pyNNsMD.src package
pyNNsMD.training package
pyNNsMD.utils package
Submodules
pyNNsMD.NNsMD module
Module contents
pyNNsMD
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
W
|
Z
_
__init__() (pyNNsMD.layers.features.Angles method)
(pyNNsMD.layers.features.Dihedral method)
(pyNNsMD.layers.features.FeatureGeometric method)
(pyNNsMD.layers.features.InverseDistanceIndexed method)
(pyNNsMD.layers.gradients.EmptyGradient method)
(pyNNsMD.layers.gradients.PropagateEnergyGradient method)
(pyNNsMD.layers.gradients.PropagateNACGradient method)
(pyNNsMD.layers.gradients.PropagateNACGradient2 method)
(pyNNsMD.layers.mlp.MLP method)
(pyNNsMD.layers.normalize.ConstLayerNormalization method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
(pyNNsMD.NNsMD.NeuralNetEnsemble method)
(pyNNsMD.utils.activ.leaky_softplus method)
(pyNNsMD.utils.callbacks.EarlyStopping method)
(pyNNsMD.utils.callbacks.LinearLearningRateScheduler method)
(pyNNsMD.utils.callbacks.LinearWarmupExponentialLearningRateScheduler method)
(pyNNsMD.utils.callbacks.StepWiseLearningScheduler method)
A
Angles (class in pyNNsMD.layers.features)
B
build() (pyNNsMD.layers.features.Angles method)
(pyNNsMD.layers.features.Dihedral method)
(pyNNsMD.layers.features.FeatureGeometric method)
(pyNNsMD.layers.features.InverseDistance method)
(pyNNsMD.layers.features.InverseDistanceIndexed method)
(pyNNsMD.layers.gradients.EmptyGradient method)
(pyNNsMD.layers.gradients.PropagateEnergyGradient method)
(pyNNsMD.layers.gradients.PropagateNACGradient method)
(pyNNsMD.layers.gradients.PropagateNACGradient2 method)
(pyNNsMD.layers.mlp.MLP method)
(pyNNsMD.layers.normalize.ConstLayerNormalization method)
(pyNNsMD.layers.normalize.DummyLayer method)
C
call() (pyNNsMD.layers.features.Angles method)
(pyNNsMD.layers.features.Dihedral method)
(pyNNsMD.layers.features.FeatureGeometric method)
(pyNNsMD.layers.features.InverseDistance method)
(pyNNsMD.layers.features.InverseDistanceIndexed method)
(pyNNsMD.layers.gradients.EmptyGradient method)
(pyNNsMD.layers.gradients.PropagateEnergyGradient method)
(pyNNsMD.layers.gradients.PropagateNACGradient method)
(pyNNsMD.layers.gradients.PropagateNACGradient2 method)
(pyNNsMD.layers.mlp.MLP method)
(pyNNsMD.layers.normalize.ConstLayerNormalization method)
(pyNNsMD.layers.normalize.DummyLayer method)
(pyNNsMD.models.mlp_e.EnergyModel method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
(pyNNsMD.NNsMD.NeuralNetEnsemble method)
(pyNNsMD.utils.activ.leaky_softplus method)
(pyNNsMD.utils.loss.NACphaselessLoss method)
(pyNNsMD.utils.loss.ZeroEmptyLoss method)
call_to_numpy_output() (pyNNsMD.models.mlp_e.EnergyModel method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
call_to_tensor_input() (pyNNsMD.models.mlp_e.EnergyModel method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
compute_const_normalization() (pyNNsMD.layers.normalize.ConstLayerNormalization method)
ConstLayerNormalization (class in pyNNsMD.layers.normalize)
create() (pyNNsMD.NNsMD.NeuralNetEnsemble method)
D
data() (pyNNsMD.NNsMD.NeuralNetEnsemble method)
data_path() (pyNNsMD.NNsMD.NeuralNetEnsemble method)
Dihedral (class in pyNNsMD.layers.features)
DummyLayer (class in pyNNsMD.layers.normalize)
E
EarlyStopping (class in pyNNsMD.utils.callbacks)
EmptyGradient (class in pyNNsMD.layers.gradients)
EnergyGradientModel (class in pyNNsMD.models.mlp_eg)
EnergyGradientStandardScaler (class in pyNNsMD.scaler.energy)
EnergyModel (class in pyNNsMD.models.mlp_e)
EnergyStandardScaler (class in pyNNsMD.scaler.energy)
F
FeatureGeometric (class in pyNNsMD.layers.features)
find_max_relative_error() (in module pyNNsMD.plots.error)
fit() (pyNNsMD.models.mlp_e.EnergyModel method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
(pyNNsMD.NNsMD.NeuralNetEnsemble method)
(pyNNsMD.scaler.base.ScalerBase method)
(pyNNsMD.scaler.energy.EnergyGradientStandardScaler method)
(pyNNsMD.scaler.energy.EnergyStandardScaler method)
(pyNNsMD.scaler.energy.GradientStandardScaler method)
(pyNNsMD.scaler.nac.NACStandardScaler method)
fit_model_by_script() (in module pyNNsMD.src.fit)
fit_model_get_python_cmd_os() (in module pyNNsMD.src.fit)
fit_transform() (pyNNsMD.scaler.base.ScalerBase method)
(pyNNsMD.scaler.energy.EnergyGradientStandardScaler method)
(pyNNsMD.scaler.energy.EnergyStandardScaler method)
(pyNNsMD.scaler.energy.GradientStandardScaler method)
(pyNNsMD.scaler.nac.NACStandardScaler method)
from_config() (pyNNsMD.scaler.base.ScalerBase class method)
G
get_config() (pyNNsMD.layers.features.Angles method)
(pyNNsMD.layers.features.Dihedral method)
(pyNNsMD.layers.features.FeatureGeometric method)
(pyNNsMD.layers.features.InverseDistanceIndexed method)
(pyNNsMD.layers.gradients.EmptyGradient method)
(pyNNsMD.layers.gradients.PropagateEnergyGradient method)
(pyNNsMD.layers.gradients.PropagateNACGradient method)
(pyNNsMD.layers.gradients.PropagateNACGradient2 method)
(pyNNsMD.layers.mlp.MLP method)
(pyNNsMD.layers.normalize.ConstLayerNormalization method)
(pyNNsMD.layers.normalize.DummyLayer method)
(pyNNsMD.models.mlp_e.EnergyModel method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
(pyNNsMD.scaler.base.ScalerBase method)
(pyNNsMD.scaler.energy.EnergyGradientStandardScaler method)
(pyNNsMD.scaler.energy.EnergyStandardScaler method)
(pyNNsMD.scaler.energy.GradientStandardScaler method)
(pyNNsMD.scaler.nac.NACStandardScaler method)
(pyNNsMD.utils.activ.leaky_softplus method)
(pyNNsMD.utils.callbacks.EarlyStopping method)
(pyNNsMD.utils.callbacks.LinearLearningRateScheduler method)
(pyNNsMD.utils.callbacks.LinearWarmupExponentialLearningRateScheduler method)
(pyNNsMD.utils.callbacks.StepWiseLearningScheduler method)
(pyNNsMD.utils.loss.NACphaselessLoss method)
(pyNNsMD.utils.loss.ScaledMeanAbsoluteError method)
get_feature_type_segmentation() (pyNNsMD.layers.features.FeatureGeometric method)
get_lr_metric() (in module pyNNsMD.utils.loss)
get_path_for_fit_script() (in module pyNNsMD.src.fit)
GradientModel2 (class in pyNNsMD.models.mlp_g2)
GradientStandardScaler (class in pyNNsMD.scaler.energy)
I
inverse_transform() (pyNNsMD.scaler.base.ScalerBase method)
(pyNNsMD.scaler.energy.EnergyGradientStandardScaler method)
(pyNNsMD.scaler.energy.EnergyStandardScaler method)
(pyNNsMD.scaler.energy.GradientStandardScaler method)
(pyNNsMD.scaler.nac.NACStandardScaler method)
InverseDistance (class in pyNNsMD.layers.features)
InverseDistanceIndexed (class in pyNNsMD.layers.features)
L
leaky_softplus (class in pyNNsMD.utils.activ)
LinearLearningRateScheduler (class in pyNNsMD.utils.callbacks)
LinearWarmupExponentialLearningRateScheduler (class in pyNNsMD.utils.callbacks)
load() (pyNNsMD.NNsMD.NeuralNetEnsemble method)
(pyNNsMD.scaler.base.ScalerBase method)
load_hyper_file() (in module pyNNsMD.utils.data)
load_json_file() (in module pyNNsMD.utils.data)
load_pickle_file() (in module pyNNsMD.utils.data)
load_weights() (pyNNsMD.scaler.energy.EnergyGradientStandardScaler method)
(pyNNsMD.scaler.energy.EnergyStandardScaler method)
(pyNNsMD.scaler.energy.GradientStandardScaler method)
(pyNNsMD.scaler.nac.NACStandardScaler method)
load_yaml_file() (in module pyNNsMD.utils.data)
M
merge_hist() (in module pyNNsMD.utils.loss)
MLP (class in pyNNsMD.layers.mlp)
module
pyNNsMD
pyNNsMD.data
pyNNsMD.datasets
pyNNsMD.hypers
pyNNsMD.hypers.hyper_mlp_e
pyNNsMD.hypers.hyper_mlp_eg
pyNNsMD.hypers.hyper_mlp_g2
pyNNsMD.hypers.hyper_mlp_nac
pyNNsMD.hypers.hyper_mlp_nac2
pyNNsMD.hypers.hyper_schnet_e
pyNNsMD.layers
pyNNsMD.layers.features
pyNNsMD.layers.gradients
pyNNsMD.layers.mlp
pyNNsMD.layers.normalize
pyNNsMD.models
pyNNsMD.models.mlp_e
pyNNsMD.models.mlp_eg
pyNNsMD.models.mlp_g2
pyNNsMD.models.mlp_nac
pyNNsMD.models.mlp_nac2
pyNNsMD.NNsMD
pyNNsMD.plots
pyNNsMD.plots.error
pyNNsMD.plots.loss
pyNNsMD.plots.pred
pyNNsMD.scaler
pyNNsMD.scaler.base
pyNNsMD.scaler.energy
pyNNsMD.scaler.nac
pyNNsMD.src
pyNNsMD.src.device
pyNNsMD.src.fit
pyNNsMD.training
pyNNsMD.utils
pyNNsMD.utils.activ
pyNNsMD.utils.callbacks
pyNNsMD.utils.data
pyNNsMD.utils.loss
N
NACModel (class in pyNNsMD.models.mlp_nac)
NACModel2 (class in pyNNsMD.models.mlp_nac2)
NACphaselessLoss (class in pyNNsMD.utils.loss)
NACStandardScaler (class in pyNNsMD.scaler.nac)
NeuralNetEnsemble (class in pyNNsMD.NNsMD)
O
on_epoch_end() (pyNNsMD.utils.callbacks.EarlyStopping method)
on_train_begin() (pyNNsMD.utils.callbacks.EarlyStopping method)
on_train_end() (pyNNsMD.utils.callbacks.EarlyStopping method)
P
parse_list_to_xyz_str() (in module pyNNsMD.utils.data)
plot_error_vec_max() (in module pyNNsMD.plots.error)
plot_error_vec_mean() (in module pyNNsMD.plots.error)
plot_learning_curve() (in module pyNNsMD.plots.loss)
plot_loss_curves() (in module pyNNsMD.plots.loss)
plot_scatter_prediction() (in module pyNNsMD.plots.pred)
precompute_feature_in_chunks() (pyNNsMD.models.mlp_e.EnergyModel method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
predict() (pyNNsMD.NNsMD.NeuralNetEnsemble method)
predict_chunk_feature() (pyNNsMD.models.mlp_e.EnergyModel method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
print_params_info() (pyNNsMD.scaler.energy.EnergyGradientStandardScaler method)
(pyNNsMD.scaler.energy.EnergyStandardScaler method)
(pyNNsMD.scaler.energy.GradientStandardScaler method)
(pyNNsMD.scaler.nac.NACStandardScaler method)
PropagateEnergyGradient (class in pyNNsMD.layers.gradients)
PropagateNACGradient (class in pyNNsMD.layers.gradients)
PropagateNACGradient2 (class in pyNNsMD.layers.gradients)
pyNNsMD
module
pyNNsMD.data
module
pyNNsMD.datasets
module
pyNNsMD.hypers
module
pyNNsMD.hypers.hyper_mlp_e
module
pyNNsMD.hypers.hyper_mlp_eg
module
pyNNsMD.hypers.hyper_mlp_g2
module
pyNNsMD.hypers.hyper_mlp_nac
module
pyNNsMD.hypers.hyper_mlp_nac2
module
pyNNsMD.hypers.hyper_schnet_e
module
pyNNsMD.layers
module
pyNNsMD.layers.features
module
pyNNsMD.layers.gradients
module
pyNNsMD.layers.mlp
module
pyNNsMD.layers.normalize
module
pyNNsMD.models
module
pyNNsMD.models.mlp_e
module
pyNNsMD.models.mlp_eg
module
pyNNsMD.models.mlp_g2
module
pyNNsMD.models.mlp_nac
module
pyNNsMD.models.mlp_nac2
module
pyNNsMD.NNsMD
module
pyNNsMD.plots
module
pyNNsMD.plots.error
module
pyNNsMD.plots.loss
module
pyNNsMD.plots.pred
module
pyNNsMD.scaler
module
pyNNsMD.scaler.base
module
pyNNsMD.scaler.energy
module
pyNNsMD.scaler.nac
module
pyNNsMD.src
module
pyNNsMD.src.device
module
pyNNsMD.src.fit
module
pyNNsMD.training
module
pyNNsMD.utils
module
pyNNsMD.utils.activ
module
pyNNsMD.utils.callbacks
module
pyNNsMD.utils.data
module
pyNNsMD.utils.loss
module
R
r2_metric() (in module pyNNsMD.utils.loss)
read_xyz_file() (in module pyNNsMD.utils.data)
reset_states() (pyNNsMD.utils.loss.ScaledMeanAbsoluteError method)
S
save() (pyNNsMD.models.mlp_e.EnergyModel method)
(pyNNsMD.models.mlp_eg.EnergyGradientModel method)
(pyNNsMD.models.mlp_g2.GradientModel2 method)
(pyNNsMD.models.mlp_nac.NACModel method)
(pyNNsMD.models.mlp_nac2.NACModel2 method)
(pyNNsMD.NNsMD.NeuralNetEnsemble method)
(pyNNsMD.scaler.base.ScalerBase method)
save_json_file() (in module pyNNsMD.utils.data)
save_pickle_file() (in module pyNNsMD.utils.data)
save_weights() (pyNNsMD.scaler.energy.EnergyGradientStandardScaler method)
(pyNNsMD.scaler.energy.EnergyStandardScaler method)
(pyNNsMD.scaler.energy.GradientStandardScaler method)
(pyNNsMD.scaler.nac.NACStandardScaler method)
save_yaml_file() (in module pyNNsMD.utils.data)
ScaledMeanAbsoluteError (class in pyNNsMD.utils.loss)
ScalerBase (class in pyNNsMD.scaler.base)
schedule_epoch_lr() (pyNNsMD.utils.callbacks.LinearLearningRateScheduler method)
(pyNNsMD.utils.callbacks.LinearWarmupExponentialLearningRateScheduler method)
(pyNNsMD.utils.callbacks.StepWiseLearningScheduler method)
set_gpu() (in module pyNNsMD.src.device)
set_mol_index() (pyNNsMD.layers.features.FeatureGeometric method)
set_scale() (pyNNsMD.utils.loss.ScaledMeanAbsoluteError method)
shifted_softplus() (in module pyNNsMD.utils.activ)
StepWiseLearningScheduler (class in pyNNsMD.utils.callbacks)
T
train_test_indices() (pyNNsMD.NNsMD.NeuralNetEnsemble method)
train_test_split() (pyNNsMD.NNsMD.NeuralNetEnsemble method)
training() (pyNNsMD.NNsMD.NeuralNetEnsemble method)
transform() (pyNNsMD.scaler.base.ScalerBase method)
(pyNNsMD.scaler.energy.EnergyGradientStandardScaler method)
(pyNNsMD.scaler.energy.EnergyStandardScaler method)
(pyNNsMD.scaler.energy.GradientStandardScaler method)
(pyNNsMD.scaler.nac.NACStandardScaler method)
U
update_state() (pyNNsMD.utils.loss.ScaledMeanAbsoluteError method)
W
write_list_to_xyz_file() (in module pyNNsMD.utils.data)
Z
ZeroEmptyLoss (class in pyNNsMD.utils.loss)
Read the Docs
v: latest
Versions
latest
stable
Downloads
On Read the Docs
Project Home
Builds